jaccard_groups_2460

jaccard_groups_2460

Back to index

Entry name: jaccard_groups_2460
Common denominator: Jaccard index of protein domains
Number of operons: 8
Average COG: 0.18 +- 0.23

Common protein domains
Domain ID	Domain name	Times found
TIGR01733	amino acid adenylation domain	8/8
TIGR01720	non-ribosomal peptide synthase domain TIGR01720	8/8
PF13193	AMP-binding enzyme C-terminal domain	8/8
PF07690	Major Facilitator Superfamily	8/8
PF01382	Avidin family	8/8
PF00668	Condensation domain	8/8
PF00550	Phosphopantetheine attachment site	8/8
PF00501	AMP-binding enzyme	8/8
PF00106	short chain dehydrogenase	8/8
TIGR01727	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain	5/8
PF08352	Oligopeptide/dipeptide transporter, C-terminal region	5/8
PF00528	Binding-protein-dependent transport system inner membrane component	5/8
PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle	5/8
PF00005	ABC transporter	5/8

Data per operon
Operon name	Score	Number of genes	antiSMASH overlap	COG score	Passed filter	Found domains	Nr of known RiPP domains
Streptomyces_RBGC_342342	141.3592233009709	23	t1pks-nrps (total overlap)	0.20 +- 0.23	True	14 PF00005 PF00106 PF00496 PF00501 PF00528 PF00550 PF00668 PF01382 PF07690 PF08352 PF13193 TIGR01720 TIGR01727 TIGR01733	0
Streptomyces_RBGC_499710	171.05263157894734	16	nrps (total overlap)	0.03 +- 0.00	True	9 PF00106 PF00501 PF00550 PF00668 PF01382 PF07690 PF13193 TIGR01720 TIGR01733	0
Streptomyces_RBGC_57700	115.89304812834224	23	t1pks-nrps (total overlap)	0.24 +- 0.25	True	14 PF00005 PF00106 PF00496 PF00501 PF00528 PF00550 PF00668 PF01382 PF07690 PF08352 PF13193 TIGR01720 TIGR01727 TIGR01733	0
Streptomyces_RBGC_555563	70.45161290322582	22	t1pks-nrps (total overlap)	0.20 +- 0.23	True	14 PF00005 PF00106 PF00496 PF00501 PF00528 PF00550 PF00668 PF01382 PF07690 PF08352 PF13193 TIGR01720 TIGR01727 TIGR01733	0
Streptomyces_RBGC_193232	77.39999999999999	17	t1pks-nrps (total overlap)	0.06 +- 0.06	True	9 PF00106 PF00501 PF00550 PF00668 PF01382 PF07690 PF13193 TIGR01720 TIGR01733	0
Streptomyces_RBGC_617905	406.25	16	t1pks-nrps (total overlap)	0.01 +- 0.01	True	9 PF00106 PF00501 PF00550 PF00668 PF01382 PF07690 PF13193 TIGR01720 TIGR01733	0
Streptomyces_RBGC_627467	115.89304812834223	23	t1pks-nrps (total overlap)	0.24 +- 0.25	True	14 PF00005 PF00106 PF00496 PF00501 PF00528 PF00550 PF00668 PF01382 PF07690 PF08352 PF13193 TIGR01720 TIGR01727 TIGR01733	0
Streptomyces_RBGC_495331	70.45161290322582	22	t1pks-nrps (total overlap)	0.20 +- 0.23	True	14 PF00005 PF00106 PF00496 PF00501 PF00528 PF00550 PF00668 PF01382 PF07690 PF08352 PF13193 TIGR01720 TIGR01727 TIGR01733	0