jaccard_groups_3399

jaccard_groups_3399

Back to index

Entry name: jaccard_groups_3399
Common denominator: Jaccard index of protein domains
Number of operons: 7
Average COG: 0.02 +- 0.02

Common protein domains
Domain ID	Domain name	Times found
PF18603	L-amino acid ligase C-terminal domain 2	7/7
PF13535	ATP-grasp domain	7/7
PF13434	L-lysine 6-monooxygenase (NADPH-requiring)	7/7
PF09334	tRNA synthetases class I (M)	7/7
PF08031	Berberine and berberine like	7/7
PF07883	Cupin domain	7/7
PF01565	FAD binding domain	7/7
PF01266	FAD dependent oxidoreductase	7/7
PF08028	Acyl-CoA dehydrogenase, C-terminal domain	6/7
PF07690	Major Facilitator Superfamily	6/7
PF02771	Acyl-CoA dehydrogenase, N-terminal domain	6/7
PF13714	Phosphoenolpyruvate phosphomutase	5/7
PF02274	Amidinotransferase	5/7
PF18130	ATP-grasp N-terminal domain	4/7
PF01613	Flavin reductase like domain	4/7

Data per operon
Operon name	Score	Number of genes	antiSMASH overlap	COG score	Passed filter	Found domains	Nr of known RiPP domains
Streptomyces_RBGC_476661	1032.0	24	None found	0.01 +- 0.00	True	13 PF01266 PF01565 PF02274 PF04237 PF07690 PF07883 PF08031 PF09334 PF13434 PF13535 PF13714 PF18130 PF18603	0
Streptomyces_RBGC_303317	909.9999999999999	25	t3pks (partial overlap)	0.01 +- 0.00	True	16 PF00072 PF00196 PF01266 PF01565 PF02310 PF02771 PF04055 PF07690 PF07883 PF08028 PF08031 PF09334 PF13434 PF13535 PF18603 TIGR04428	1
Streptomyces_RBGC_516750	370.9756097560976	24	indole-t3pks-nrps (total overlap)	0.02 +- 0.01	True	16 PF00072 PF00196 PF01266 PF01565 PF02310 PF02771 PF04055 PF07690 PF07883 PF08028 PF08031 PF09334 PF13434 PF13535 PF18603 TIGR04428	1
Streptomyces_RBGC_169037	982.3846153846152	29	None found	0.02 +- 0.03	True	17 PF01266 PF01565 PF01613 PF02274 PF02771 PF04234 PF05425 PF07690 PF07883 PF08028 PF08031 PF09334 PF13434 PF13535 PF13714 PF18130 PF18603	0
Streptomyces_RBGC_415436	182.8860759493671	19	None found	0.04 +- 0.03	True	14 PF01266 PF01565 PF01613 PF02274 PF02771 PF07883 PF08028 PF08031 PF09334 PF13434 PF13535 PF13714 PF18130 PF18603	0
Streptomyces_RBGC_661276	723.0637243332546	28	None found	0.02 +- 0.01	True	17 PF01266 PF01565 PF01613 PF02274 PF02771 PF04234 PF05425 PF05751 PF07690 PF07883 PF08028 PF08031 PF09334 PF13434 PF13535 PF13714 PF18603	0
Streptomyces_RBGC_227761	626.5714285714286	28	None found	0.04 +- 0.02	True	17 PF01266 PF01565 PF01613 PF02274 PF02771 PF04234 PF05425 PF07690 PF07883 PF08028 PF08031 PF09334 PF13434 PF13535 PF13714 PF18130 PF18603	0