jaccard_groups_3973

jaccard_groups_3973

Back to index

Entry name: jaccard_groups_3973
Common denominator: Jaccard index of protein domains
Number of operons: 5
Average COG: 0.05 +- 0.19

Common protein domains
Domain ID	Domain name	Times found
TIGR03297	phosphonopyruvate decarboxylase	5/5
TIGR02315	phosphonate ABC transporter, ATP-binding protein	5/5
TIGR01356	3-phosphoshikimate 1-carboxyvinyltransferase	5/5
TIGR01307	phosphoglycerate mutase (2,3-diphosphoglycerate-independent)	5/5
TIGR01098	phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein	5/5
TIGR01097	phosphonate ABC transporter, permease protein PhnE	5/5
PF16197	Ketoacyl-synthetase C-terminal extension	5/5
PF14765	Polyketide synthase dehydratase	5/5
PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein	5/5
PF08659	KR domain	5/5
PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III	5/5
PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	5/5
PF02801	Beta-ketoacyl synthase, C-terminal domain	5/5
PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	5/5
PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	5/5
PF01676	Metalloenzyme superfamily	5/5
PF00698	Acyl transferase domain	5/5
PF00528	Binding-protein-dependent transport system inner membrane component	5/5
PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	5/5
PF00117	Glutamine amidotransferase class-I	5/5
PF00109	Beta-ketoacyl synthase, N-terminal domain	5/5
PF00106	short chain dehydrogenase	5/5
PF00005	ABC transporter	5/5
PF00550	Phosphopantetheine attachment site	4/5

Data per operon
Operon name	Score	Number of genes	antiSMASH overlap	COG score	Passed filter	Found domains	Nr of known RiPP domains
Streptomyces_RBGC_700918	2036.357142857143	25	otherks-t1pks-nrps (total overlap)	0.02 +- 0.00	True	29 PF00005 PF00106 PF00109 PF00117 PF00275 PF00384 PF00528 PF00550 PF00698 PF01568 PF01676 PF02775 PF02776 PF02801 PF04879 PF07690 PF08541 PF08545 PF08659 PF12974 PF13738 PF14765 PF16197 TIGR01097 TIGR01098 TIGR01307 TIGR01356 TIGR02315 TIGR03297	0
Streptomyces_RBGC_401873	139.2857142857143	21	t1pks-otherks (total overlap)	0.11 +- 0.29	True	24 PF00005 PF00106 PF00109 PF00117 PF00275 PF00528 PF00550 PF00698 PF01676 PF02775 PF02776 PF02801 PF08541 PF08545 PF08659 PF12974 PF14765 PF16197 TIGR01097 TIGR01098 TIGR01307 TIGR01356 TIGR02315 TIGR03297	0
Streptomyces_RBGC_403821	1806.0	20	t1pks-otherks (total overlap)	0.01 +- 0.00	True	23 PF00005 PF00106 PF00109 PF00117 PF00275 PF00528 PF00698 PF01676 PF02775 PF02776 PF02801 PF08541 PF08545 PF08659 PF12974 PF14765 PF16197 TIGR01097 TIGR01098 TIGR01307 TIGR01356 TIGR02315 TIGR03297	0
Streptomyces_RBGC_531447	2064.0	22	t1pks-otherks (total overlap)	0.01 +- 0.00	True	24 PF00005 PF00106 PF00109 PF00117 PF00275 PF00528 PF00550 PF00698 PF01676 PF02775 PF02776 PF02801 PF08541 PF08545 PF08659 PF12974 PF14765 PF16197 TIGR01097 TIGR01098 TIGR01307 TIGR01356 TIGR02315 TIGR03297	0
Streptomyces_RBGC_160815	136.36363636363637	21	t1pks-otherks (total overlap)	0.11 +- 0.29	True	24 PF00005 PF00106 PF00109 PF00117 PF00275 PF00528 PF00550 PF00698 PF01676 PF02775 PF02776 PF02801 PF08541 PF08545 PF08659 PF12974 PF14765 PF16197 TIGR01097 TIGR01098 TIGR01307 TIGR01356 TIGR02315 TIGR03297	0