precursor_groups_12360

precursor_groups_12360

Back to index

Entry name: precursor_groups_12360
Common denominator: Precursor BLAST
Number of operons: 6
Average COG: 0.16 +- 0.12

Precursor alignment

Common protein domains
Domain ID	Domain name	Times found
TIGR03346	ATP-dependent chaperone protein ClpB	6/6
TIGR02350	chaperone protein DnaK	6/6
PF17871	AAA lid domain	6/6
PF10431	C-terminal, D2-small domain, of ClpB protein	6/6
PF07992	Pyridine nucleotide-disulphide oxidoreductase	6/6
PF07724	AAA domain (Cdc48 subfamily)	6/6
PF02861	Clp amino terminal domain, pathogenicity island component	6/6
PF02148	Zn-finger in ubiquitin-hydrolases and other protein	6/6
PF01556	DnaJ C terminal domain	6/6
PF01025	GrpE	6/6
PF00226	DnaJ domain	6/6
PF00085	Thioredoxin	6/6
PF00027	Cyclic nucleotide-binding domain	6/6
PF00012	Hsp70 protein	6/6
PF00004	ATPase family associated with various cellular activities (AAA)	6/6
TIGR01068	thioredoxin	5/6
PF13591	MerR HTH family regulatory protein	5/6
PF00011	Hsp20/alpha crystallin family	5/6

Data per operon
Operon name	Score	Number of genes	antiSMASH overlap	COG score	Passed filter	Found domains	Nr of known RiPP domains
Streptomyces_RBGC_69707	29.620253164556956	20	None found	0.14 +- 0.08	True	18 PF00004 PF00011 PF00012 PF00027 PF00085 PF00226 PF01025 PF01556 PF02148 PF02861 PF07724 PF07992 PF10431 PF13591 PF17871 TIGR01068 TIGR02350 TIGR03346	0
Streptomyces_RBGC_555708	25.37704918032787	20	None found	0.16 +- 0.06	True	18 PF00004 PF00011 PF00012 PF00027 PF00085 PF00226 PF01025 PF01556 PF02148 PF02861 PF07724 PF07992 PF10431 PF13591 PF17871 TIGR01068 TIGR02350 TIGR03346	0
Streptomyces_RBGC_79665	12.534412955465587	19	None found	0.24 +- 0.24	True	17 PF00004 PF00011 PF00012 PF00027 PF00085 PF00226 PF01025 PF01556 PF02148 PF02861 PF07724 PF07992 PF10431 PF17871 TIGR01068 TIGR02350 TIGR03346	0
Streptomyces_RBGC_241412	24.248704663212436	20	None found	0.16 +- 0.06	True	18 PF00004 PF00011 PF00012 PF00027 PF00085 PF00226 PF01025 PF01556 PF02148 PF02861 PF07724 PF07992 PF10431 PF13591 PF17871 TIGR01068 TIGR02350 TIGR03346	0
Streptomyces_RBGC_420069	25.37704918032787	20	None found	0.16 +- 0.06	True	16 PF00004 PF00012 PF00027 PF00085 PF00226 PF01025 PF01556 PF02148 PF02861 PF07724 PF07992 PF10431 PF13591 PF17871 TIGR02350 TIGR03346	0
Streptomyces_RBGC_596808	34.86486486486486	21	None found	0.11 +- 0.05	True	18 PF00004 PF00011 PF00012 PF00027 PF00085 PF00226 PF01025 PF01556 PF02148 PF02861 PF07724 PF07992 PF10431 PF13591 PF17871 TIGR01068 TIGR02350 TIGR03346	0