precursor_groups_84428

Back to index

Entry name: precursor_groups_84428
Common denominator: Precursor BLAST
Number of operons: 2
Average COG: 0.01 +- 0.01

Precursor alignment

Common protein domains
Domain ID	Domain name	Times found
TIGR00262	tryptophan synthase, alpha subunit	2/2
PF18130	ATP-grasp N-terminal domain	2/2
PF13535	ATP-grasp domain	2/2
PF08239	Bacterial SH3 domain	2/2
PF07690	Major Facilitator Superfamily	2/2
PF00290	Tryptophan synthase alpha chain	2/2
TIGR03438	dimethylhistidine N-methyltransferase	1/2
TIGR01509	HAD hydrolase, family IA, variant 3	1/2
PF18555	MobL relaxases	1/2
PF18013	Phage tail lysozyme	1/2
PF14528	LAGLIDADG-like domain	1/2
PF12846	AAA-like domain	1/2
PF12696	TraM recognition site of TraD and TraG	1/2
PF12642	Conjugative transposon protein TcpC	1/2
PF10017	Histidine-specific methyltransferase, SAM-dependent	1/2
PF07724	AAA domain (Cdc48 subfamily)	1/2
PF02534	Type IV secretory system Conjugative DNA transfer	1/2
PF00562	RNA polymerase Rpb2, domain 6	1/2
PF00216	Bacterial DNA-binding protein	1/2
PF00004	ATPase family associated with various cellular activities (AAA)	1/2

Data per operon
Operon name	Score	Number of genes	antiSMASH overlap	COG score	Passed filter	Found domains	Nr of known RiPP domains
Streptomyces_RBGC_667476	206.93877551020407	37	None found	0.01 +- 0.01	True	15 PF00004 PF00216 PF00290 PF00562 PF02534 PF07690 PF07724 PF08239 PF12696 PF13535 PF14528 PF18013 PF18130 PF18555 TIGR00262	0
Streptomyces_RBGC_351641	2322.0	35	nucleoside (partial overlap)	0.01 +- 0.00	True	11 PF00290 PF07690 PF08239 PF10017 PF12642 PF12846 PF13535 PF18130 TIGR00262 TIGR01509 TIGR03438	0